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| Project Title | Implementing HPC Bioinformatics Algorithms II |
| Summary | In 2015-2016, Blue Waters Intern Daniel Couch wrote sequential and HPC programs and performed timings to accompany an educational module on “Aligning SequencesSequentially and Concurrently,” available at http://www.wofford.edu/ecs/. An abstract on the module and programs has been submitted for presentation at the International Conference on Computational Science. Moreover, by the end of the school year, the team anticipates completing another project involving a HPC implementation of the Gene Ontology (GO) Algorithm. |
| Job Description | In 2015-2016, Blue Waters Intern Daniel Couch wrote sequential and HPC programs and performed timings to accompany an educational module on “Aligning SequencesSequentially and Concurrently,” available at http://www.wofford.edu/ecs/. An abstract on the module and programs has been submitted for presentation at the International Conference on Computational Science. Moreover, by the end of the school year, the team anticipates completing another project involving a HPC implementation of the Gene Ontology (GO) Algorithm. The 2016-2017 intern will help us implement at least one additional HPC bioinformatics algorithm in C and MPI and possibly R; will perform timings; and will assist us in developing associated materials, such as a manual, tutorial, and module. |
| Start Date | 05/15/2016 |
| End Date | 05/15/2017 |
| Location | The student will be working from home and at Wofford College in Spartanburg, SC. |
| Interns | Dmitriy Kaplun
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